PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 342aa    MW: 37304.6 Da    PI: 8.7924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000543659123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    +kC+ C+k  s+ s ++ H    H
  XP_009115024.1 36 FKCHVCHKKLSTASGMVIHVLQvH 59
                    89*****************87666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.716766IPR003656Zinc finger, BED-type
SMARTSM00355201235IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.85E-51261No hitNo description
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.0843659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK  60
ENVTKVPNSK EGRDSTDIEI YGMQGIPPDV LAAHYGEEEE ESPAKVAKID IPSVPLGAAV  120
PRPYGMVYQP QQVPGAVPAR PMYYPGPPMR PAGPGWPMPP PPRPQQWYPP GSVPPPPHLG  180
YRPPQLFPVH GMGMNMPSSA PAPPGIQPSS PAMPVSQPLF PVVNNTTPSQ ASPFSAPLPV  240
GGAQQPPNNS FPVGGNNSHS YASGPNTSGP SIGPPPVIAN KAPSSQPNEV YLVWDDEAMS  300
MEERRMSLPK YKVHDETSQM NSINEAIDRR ISESRLAGRM AF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.186861e-179bud| flower| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531160.0AK353116.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115024.10.0PREDICTED: protein SUPPRESSOR OF FRI 4
SwissprotQ9C5G00.0SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLM4E3020.0M4E302_BRARP; Uncharacterized protein
STRINGBra023153.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.10.0C2H2 family protein